Clazz.declarePackage("J.shapespecial");
Clazz.load(null, "J.shapespecial.Dipole", ["JU.P3", "$.SB", "$.V3", "JU.C", "$.Escape"], function(){
var c$ = Clazz.decorateAsClass(function(){
this.thisID = "";
this.mad = 0;
this.colix = 0;
this.type = 0;
this.origin = null;
this.center = null;
this.vector = null;
this.dipoleInfo = "";
this.dipoleValue = 0;
this.isUserValue = false;
this.offsetSide = 0;
this.offsetAngstroms = 0;
this.offsetPt = null;
this.offsetPercent = 0;
this.visibilityFlags = 0;
this.modelIndex = 0;
this.visible = false;
this.noCross = false;
this.haveAtoms = false;
this.isValid = false;
this.atoms = null;
this.coords = null;
this.bond = null;
this.bsMolecule = null;
this.lstDipoles = null;
Clazz.instantialize(this, arguments);}, J.shapespecial, "Dipole", null);
Clazz.prepareFields (c$, function(){
this.atoms =  new Array(2);
this.coords =  new Array(2);
});
Clazz.defineMethod(c$, "init", 
function(modelIndex, thisID, dipoleInfo, colix, mad, visible){
this.modelIndex = modelIndex;
this.thisID = thisID;
this.dipoleInfo = dipoleInfo;
this.colix = colix;
this.mad = mad;
this.visible = visible;
this.type = 0;
return this;
}, "~N,~S,~S,~N,~N,~B");
Clazz.defineMethod(c$, "setTranslucent", 
function(isTranslucent, translucentLevel){
this.colix = JU.C.getColixTranslucent3(this.colix, isTranslucent, translucentLevel);
}, "~B,~N");
Clazz.defineMethod(c$, "set", 
function(d){
this.thisID = d.thisID;
this.dipoleInfo = d.dipoleInfo;
this.dipoleValue = d.dipoleValue;
this.mad = d.mad;
this.lstDipoles = d.lstDipoles;
if (this.lstDipoles != null) this.isValid = true;
this.offsetAngstroms = d.offsetAngstroms;
this.offsetPercent = d.offsetPercent;
this.offsetSide = d.offsetSide;
this.vector = JU.V3.newV(d.vector);
this.origin = JU.P3.newP(d.origin);
if (d.offsetPt != null) {
this.origin.add(d.offsetPt);
this.offsetPt = JU.P3.newP(d.offsetPt);
}this.bsMolecule = d.bsMolecule;
this.haveAtoms = (d.atoms[0] != null);
if (this.haveAtoms) {
this.atoms[0] = d.atoms[0];
this.atoms[1] = d.atoms[1];
this.centerDipole();
} else {
this.center = null;
}}, "J.shapespecial.Dipole");
Clazz.defineMethod(c$, "set2", 
function(pt1, pt2){
this.coords[0] = JU.P3.newP(pt1);
this.coords[1] = JU.P3.newP(pt2);
this.isValid = (this.coords[0].distance(this.coords[1]) > 0.1);
if (this.dipoleValue < 0) {
this.origin = JU.P3.newP(pt2);
this.vector = JU.V3.newV(pt1);
this.dipoleValue = -this.dipoleValue;
} else {
this.origin = JU.P3.newP(pt1);
this.vector = JU.V3.newV(pt2);
}this.dipoleInfo = "" + this.origin + this.vector;
this.vector.sub(this.origin);
if (this.dipoleValue == 0) this.dipoleValue = this.vector.length();
 else this.vector.scale(this.dipoleValue / this.vector.length());
this.type = 1;
}, "JU.P3,JU.P3");
Clazz.defineMethod(c$, "setValue", 
function(value){
var d = this.dipoleValue;
this.dipoleValue = value;
if (value == 0) this.isValid = false;
if (this.vector == null) return;
this.vector.scale(this.dipoleValue / this.vector.length());
if (d * this.dipoleValue < 0) this.origin.sub(this.vector);
}, "~N");
Clazz.defineMethod(c$, "set2Value", 
function(pt1, pt2, value){
this.dipoleValue = value;
this.atoms[0] = null;
this.set2(pt1, pt2);
}, "JU.P3,JU.P3,~N");
Clazz.defineMethod(c$, "setPtVector", 
function(pt1, dipole){
this.setValue(dipole.length());
var pt2 = JU.P3.newP(pt1);
pt2.add(dipole);
this.set2(pt1, pt2);
this.type = 5;
}, "JU.P3,JU.V3");
Clazz.defineMethod(c$, "set2AtomValue", 
function(atom1, atom2, value){
this.setValue(value);
this.set2(atom1, atom2);
this.offsetSide = 0.4;
this.mad = 10;
this.atoms[0] = atom1;
this.atoms[1] = atom2;
this.haveAtoms = true;
this.centerDipole();
}, "JM.Atom,JM.Atom,~N");
Clazz.defineMethod(c$, "centerDipole", 
function(){
this.isValid = (this.atoms[0] !== this.atoms[1] && this.dipoleValue != 0);
if (!this.isValid) return;
var f = this.atoms[0].distance(this.atoms[1]) / (2 * this.dipoleValue) - 0.5;
this.origin.scaleAdd2(f, this.vector, this.atoms[0]);
this.center =  new JU.P3();
this.center.scaleAdd2(0.5, this.vector, this.origin);
this.bond = this.atoms[0].getBond(this.atoms[1]);
this.type = (this.bond == null ? 2 : 3);
});
Clazz.defineMethod(c$, "isBondType", 
function(){
return (this.type == 2 || this.type == 3);
});
Clazz.defineMethod(c$, "getShapeState", 
function(){
if (!this.isValid) return "";
var s =  new JU.SB();
s.append("dipole ID ").append(this.thisID);
if (this.lstDipoles != null) s.append(" all ").append(JU.Escape.eBS(this.bsMolecule));
 else if (this.haveAtoms) s.append(" ({").appendI(this.atoms[0].i).append("}) ({").appendI(this.atoms[1].i).append("})");
 else if (this.coords[0] == null) return "";
 else s.append(" ").append(JU.Escape.eP(this.coords[0])).append(" ").append(JU.Escape.eP(this.coords[1]));
if (this.isUserValue) s.append(" value ").appendF(this.dipoleValue);
if (this.mad != 10) s.append(" width ").appendF(this.mad / 1000);
if (this.offsetAngstroms != 0) s.append(" offset ").appendF(this.offsetAngstroms);
 else if (this.offsetPercent != 0) s.append(" offset ").appendI(this.offsetPercent);
if (this.offsetSide != 0.4) s.append(" offsetSide ").appendF(this.offsetSide);
if (this.offsetPt != null) s.append(" offset ").append(JU.Escape.eP(this.offsetPt));
if (this.noCross) s.append(" nocross");
if (!this.visible) s.append(" off");
s.append(";\n");
return s.toString();
});
Clazz.defineMethod(c$, "setOffsetPt", 
function(pt){
if (this.offsetPt != null) this.origin.sub(this.offsetPt);
this.offsetPt = pt;
this.origin.add(pt);
}, "JU.P3");
});
;//5.0.1-v2 Tue Jul 23 17:25:20 CDT 2024
