Clazz.declarePackage("J.atomdata");
Clazz.load(null, "J.atomdata.AtomData", ["JU.P3", "JU.BSUtil"], function(){
var c$ = Clazz.decorateAsClass(function(){
this.programInfo = null;
this.fileName = null;
this.modelName = null;
this.modelIndex = 0;
this.bsSelected = null;
this.bsIgnored = null;
this.bsMolecules = null;
this.radiusData = null;
this.firstAtomIndex = 0;
this.firstModelIndex = 0;
this.lastModelIndex = 0;
this.hAtomRadius = 0;
this.atomIndex = null;
this.atoms = null;
this.xyz = null;
this.atomRadius = null;
this.atomicNumber = null;
this.atomMolecule = null;
this.hAtoms = null;
this.ac = 0;
this.hydrogenAtomCount = 0;
this.adpMode = 0;
Clazz.instantialize(this, arguments);}, J.atomdata, "AtomData", null);
/*LV!1824 unnec constructor*/Clazz.defineMethod(c$, "transformXYZ", 
function(mat, bs){
var p =  new Array(this.xyz.length);
if (bs == null) bs = JU.BSUtil.newBitSet2(0, this.xyz.length);
for (var i = bs.nextSetBit(0); i >= 0; i = bs.nextSetBit(i + 1)) {
if (this.xyz[i] == null) continue;
p[i] = JU.P3.newP(this.xyz[i]);
mat.rotTrans(p[i]);
}
this.xyz = p;
}, "JU.M4,JU.BS");
});
;//5.0.1-v2 Tue Jul 23 17:25:20 CDT 2024
