Clazz.declarePackage("JSV.source");
Clazz.load(["JSV.source.JDXHeader"], "JSV.source.JDXSource", ["JU.Lst"], function(){
var c$ = Clazz.decorateAsClass(function(){
this.type = 0;
this.isCompoundSource = false;
this.jdxSpectra = null;
this.errors = "";
this.filePath = null;
this.peakCount = 0;
this.isView = false;
this.inlineData = null;
Clazz.instantialize(this, arguments);}, JSV.source, "JDXSource", JSV.source.JDXHeader);
Clazz.makeConstructor(c$, 
function(type, filePath){
Clazz.superConstructor (this, JSV.source.JDXSource, []);
this.type = type;
this.setFilePath(filePath);
this.headerTable =  new JU.Lst();
this.jdxSpectra =  new JU.Lst();
this.isCompoundSource = (type != 0);
}, "~N,~S");
Clazz.defineMethod(c$, "dispose", 
function(){
this.headerTable = null;
this.jdxSpectra = null;
});
Clazz.defineMethod(c$, "getJDXSpectrum", 
function(index){
return (this.jdxSpectra.size() <= index ? null : this.jdxSpectra.get(index));
}, "~N");
Clazz.defineMethod(c$, "addJDXSpectrum", 
function(filePath, spectrum, forceSub){
if (filePath == null) filePath = this.filePath;
spectrum.setFilePath(filePath);
if (this.inlineData != null) spectrum.setInlineData(this.inlineData);
var n = this.jdxSpectra.size();
if (n == 0 || !this.jdxSpectra.get(n - 1).addSubSpectrum(spectrum, forceSub)) this.jdxSpectra.addLast(spectrum);
}, "~S,JSV.common.Spectrum,~B");
Clazz.defineMethod(c$, "getNumberOfSpectra", 
function(){
return this.jdxSpectra.size();
});
Clazz.defineMethod(c$, "getSpectra", 
function(){
return this.jdxSpectra;
});
Clazz.defineMethod(c$, "getSpectraAsArray", 
function(){
return (this.jdxSpectra == null ? null : this.jdxSpectra.toArray());
});
Clazz.defineMethod(c$, "getErrorLog", 
function(){
return this.errors;
});
Clazz.defineMethod(c$, "setErrorLog", 
function(errors){
this.errors = errors;
}, "~S");
Clazz.defineMethod(c$, "setFilePath", 
function(filePath){
this.filePath = filePath;
}, "~S");
Clazz.defineMethod(c$, "getFilePath", 
function(){
return this.filePath;
});
c$.createView = Clazz.defineMethod(c$, "createView", 
function(specs){
var source =  new JSV.source.JDXSource(-2, "view");
source.isView = true;
for (var i = 0; i < specs.size(); i++) source.addJDXSpectrum(specs.get(i).getFilePath(), specs.get(i), false);

return source;
}, "JU.Lst");
Clazz.defineMethod(c$, "getHeaderRowDataAsArray", 
function(addDataClass, rowData){
if (rowData == null) rowData =  Clazz.newArray(0, 0, null);
var data = this.getHeaderRowDataAsArray(addDataClass, rowData.length);
for (var i = rowData.length; --i >= 0; ) data[data.length - rowData.length + i] = rowData[i];

return data;
}, "~B,~A");
Clazz.defineMethod(c$, "setID", 
function(id){
this.jdxSpectra.get(0).sourceID = id;
}, "~S");
Clazz.defineMethod(c$, "matchesFilePath", 
function(filePath){
return this.filePath.equals(filePath) || this.filePath.$replace('\\', '/').equals(filePath);
}, "~S");
Clazz.defineMethod(c$, "setInlineData", 
function(data){
this.inlineData = data;
if (this.jdxSpectra != null) for (var i = this.jdxSpectra.size(); --i >= 0; ) this.jdxSpectra.get(i).setInlineData(data);

}, "~S");
});
;//5.0.1-v2 Tue Jul 23 17:25:20 CDT 2024
