Clazz.declarePackage("J.jvxl.readers");
Clazz.load(["J.jvxl.readers.BCifDensityReader"], "J.jvxl.readers.CifDensityReader", ["JU.P3", "$.PT"], function(){
var c$ = Clazz.declareType(J.jvxl.readers, "CifDensityReader", J.jvxl.readers.BCifDensityReader);
Clazz.makeConstructor(c$, 
function(){
Clazz.superConstructor (this, J.jvxl.readers.CifDensityReader, []);
});
Clazz.overrideMethod(c$, "getCifData", 
function(fileName, data){
this.cifData = this.sg.atomDataServer.readCifData(fileName, data, "CIF");
}, "~S,~O");
Clazz.overrideMethod(c$, "readCifP3", 
function(key, p3){
if (p3 == null) p3 =  new JU.P3();
var x = this.getCifFloat(key + "[0]");
if (Float.isNaN(x)) {
p3.x = NaN;
} else {
p3.x = x;
p3.y = this.getCifFloat(key + "[1]");
p3.z = this.getCifFloat(key + "[2]");
}return p3;
}, "~S,JU.P3");
Clazz.overrideMethod(c$, "getCifMap", 
function(type){
type = "data_" + type;
var list = this.cifData.get("models");
for (var i = 0; i < list.size(); i++) {
var map = list.get(i);
if (type.equalsIgnoreCase(map.get("name").toString())) return this.thisData = map;
}
return null;
}, "~S");
Clazz.overrideMethod(c$, "getCifFloat", 
function(key){
var o = this.thisData.get(key);
var x = NaN;
if (o != null) {
if ((typeof(o)=='string')) {
x = JU.PT.parseFloat(o);
} else if (Clazz.instanceOf(o, Number)) {
x = (o).floatValue();
}}return x;
}, "~S");
Clazz.overrideMethod(c$, "readCifFloats", 
function(key, values){
var list = this.thisData.get(key);
for (var i = 0, n = values.length; i < n; i++) values[i] = JU.PT.parseFloat(list.get(i));

return values;
}, "~S,~A");
});
;//5.0.1-v2 Tue Jul 23 17:25:20 CDT 2024
